PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s941951g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 560aa    MW: 61912.1 Da    PI: 4.3652
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s941951g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.11e-31651812103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XTTS CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............keki 78 
                        Fl+k+ye+++d++l+ lisw + g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+Y F+  +d  ++s +               + + 
  PDK_30s941951g001  65 FLSKTYELVDDPSLDPLISWGSAGKSFVVWDPVEFARAVLPRNFKHNNFSSFVRQLNTYCFQIGDDLVESSLRpngcypvtvsgfrkiDVDR 156
                        9***************************************************************999988666899999988877654499* PP

                        EEEEESXXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  79 weFkhksFkkgkkellekikrkkse 103
                        weF+++ F kg++ ll++i+r++s+
  PDK_30s941951g001 157 WEFANEDFVKGNRPLLRNINRRRSS 181
                        **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-4661178IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3062178IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.8E-3362178IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.8E-146588IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-2765178IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-14103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-14116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MKPFGEILDF SAQPPPRPAE ELPPYRLGPS SSSSSSFSSG DGAGGESVGI PRPLEALQSA  60
PISPFLSKTY ELVDDPSLDP LISWGSAGKS FVVWDPVEFA RAVLPRNFKH NNFSSFVRQL  120
NTYCFQIGDD LVESSLRPNG CYPVTVSGFR KIDVDRWEFA NEDFVKGNRP LLRNINRRRS  180
SQVQQVGTQL CSSAERGEPK LEGELHTLRK EKSALMQEVI RLQQEHLATV QQMDALNQQM  240
ESAEQRQKLM VSFLAKVLQN PVFLAHLKLL KGQREIASTR VRRKFLKQQL PSQSDLDESI  300
EYHQTGKKRL DLTGSTSSAL QGIEYGANKQ LSDNLLQDMV EKLGLDTSRQ ELLRGSDETA  360
LEVPDPLLLD ADSAAIQGEL PESSQTDMGS SGTECFASCP EDMTPERMFS NAKVPATESA  420
GPDPNTVSFE GKGVMEKTEA TFGGSDYAVS FPEDTFQEKM FSDAIVSANK TVSGQEEIWK  480
IGLEAGECSL SSYDDVWDSL AHDAPKLEVA AGSGELWDID LQTLGEDLEF DECLGSDLSY  540
QECESQSRLF DKNDKEKMEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-196218117123Heat shock factor protein 1
5d5v_D3e-19421784129Heat shock factor protein 1
5d5v_B3e-19421784129Heat shock factor protein 1
5d5u_B3e-19421784129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775120.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLM0SYW91e-152M0SYW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P15900_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-72heat shock transcription factor A3